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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
10
ATAC-seq
2
DNase-seq
1
RRBS
Assay category
41
DNA binding
12
DNA accessibility
1
DNA methylation
Target of assay
27
histone
27
histone modification
17
narrow histone mark
12
control
10
broad histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
122
May, 2021
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
47
August, 2017
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
November, 2018
Available data
65
fastq
58
bam
53
bigWig
33
bed narrowPeak
19
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
54
Homo sapiens
Biosample type
225
tissue
54
in vitro differentiated cells
54
primary cell
Organ
48
pancreas
36
epithelium
Project
47
AMP
7
HPAP
Genome assembly (visualization)
38
GRCh38
35
hg19
Lab
47
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
month_released!
November, 2018
BIOSAMPLE
ASSAY
54 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RRBS
primary cell
pancreatic alpha cell
13
6
pancreatic beta cell
13
3
pancreatic endocrine cell
12
skeletal muscle myoblast
3
2
1
pancreatic acinar cell
1
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