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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
Assay category
35
DNA binding
Target of assay
76
histone
76
histone modification
41
broad histone mark
35
narrow histone mark
13
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
12
May, 2021
9
August, 2017
9
June, 2019
4
September, 2018
1
November, 2017
Available data
78
bigWig
70
bed narrowPeak
68
bam
tagAlign
19
fastq
16
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
Organism
35
Homo sapiens
Biosample type
204
tissue
36
in vitro differentiated cells
35
primary cell
8
cell line
1
stem cell
Organ
epithelium
31
pancreas
8
vasculature
7
blood vessel
6
vein
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
1
eye
Project
35
AMP
Genome assembly (visualization)
33
hg19
23
GRCh38
Lab
25
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
tagAlign
organ_slims!
epithelium
kidney
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
primary cell
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
skeletal muscle satellite cell
3
cardiac fibroblast
2
mesenchymal stem cell
2
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