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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
164
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
27
DNase-seq
17
pCHi-C
10
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
279
Transcription
212
DNA accessibility
185
DNA binding
11
DNA methylation
3
3D chromatin structure
Target of assay
160
histone
160
histone modification
85
broad histone mark
75
narrow histone mark
19
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
54
May, 2022
53
June, 2019
51
February, 2023
42
February, 2021
40
September, 2020
27
July, 2019
18
August, 2017
13
October, 2019
11
July, 2018
10
April, 2018
8
January, 2021
6
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
August, 2021
2
June, 2018
1
March, 2023
1
November, 2018
1
September, 2018
Available data
394
bigWig
384
bam
207
bed narrowPeak
160
tsv
148
fastq
96
tagAlign
73
zippedFastqFolder
70
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
28
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
707
Homo sapiens
Biosample type
1917
tissue
707
primary cell
462
cell line
349
in vitro differentiated cells
10
stem cell
Organ
402
epithelium
pancreas
39
connective tissue
37
vasculature
36
kidney
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
10
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
330
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
415
hg19
323
GRCh38
Lab
295
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
49
inconsistent ontology term
27
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
tagAlign bed3+
month_released!
August, 2021
organ_slims!
blood vessel
pancreas
BIOSAMPLE
ASSAY
707 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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