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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
185
ATAC-seq
184
single cell RNA-seq
171
total RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
Assay category
357
Transcription
270
DNA accessibility
226
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
199
histone
199
histone modification
106
broad histone mark
93
narrow histone mark
22
control
8
RNA binding protein
8
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
February, 2023
73
September, 2018
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
564
bigWig
548
bam
272
fastq
262
bed narrowPeak
255
tsv
153
zippedFastqFolder
90
bigBed narrowPeak
88
tagAlign
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
tar
Organism
937
Homo sapiens
Biosample type
2398
tissue
937
primary cell
653
cell line
309
in vitro differentiated cells
10
stem cell
Organ
336
epithelium
265
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
484
AMP
248
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
577
hg19
491
GRCh38
Lab
449
AMP-T2D consortium
248
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
files.file_type!
tar
month_released!
August, 2017
August, 2018
February, 2023
BIOSAMPLE
ASSAY
937 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
15
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
34
10
25
31
1
pancreatic beta cell
22
12
11
16
1
CD8-positive, alpha-beta T cell
33
2
4
1
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