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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
197
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
27
ChIP-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
282
DNA accessibility
57
DNA methylation
27
DNA binding
10
3D chromatin structure
Target of assay
199
histone
histone modification
106
broad histone mark
93
narrow histone mark
22
control
8
RNA binding protein
8
transcription factor
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
August, 2017
12
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
386
bam
375
bigWig
316
fastq
270
tsv
153
zippedFastqFolder
72
bed narrowPeak
55
bigBed narrowPeak
34
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tagAlign
tar
Organism
829
Homo sapiens
Biosample type
1989
tissue
829
primary cell
621
cell line
251
in vitro differentiated cells
8
stem cell
Organ
324
epithelium
273
pancreas
31
connective tissue
26
kidney
19
vasculature
18
brain
14
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
6
musculature of body
6
vein
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
384
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
388
hg19
334
GRCh38
Lab
379
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
files.file_type!
tar
month_released!
August, 2017
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
829 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
ChIP-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
34
12
31
1
pancreatic beta cell
21
22
12
16
1
monocyte
54
15
1
1
exocrine cell
39
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