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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
154
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
433
Transcription
287
DNA accessibility
154
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
narrow histone mark
35
control
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
43
April, 2018
40
June, 2019
35
August, 2017
31
July, 2019
24
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
August, 2018
3
June, 2018
3
May, 2019
3
November, 2017
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
493
bam
488
bigWig
361
fastq
267
tsv
181
bed narrowPeak
153
zippedFastqFolder
73
bigBed narrowPeak
53
tagAlign
36
bed broadPeak
36
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
tar
Organism
959
Homo sapiens
Biosample type
2425
tissue
959
primary cell
576
cell line
327
in vitro differentiated cells
9
stem cell
Organ
362
epithelium
312
pancreas
34
connective tissue
29
kidney
26
vasculature
22
blood vessel
15
brain
15
vein
12
liver
10
heart
10
musculature of body
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
470
AMP
324
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
502
hg19
422
GRCh38
Lab
445
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
tar
month_released!
August, 2018
target.investigated_as!
RNA binding protein
narrow histone mark
BIOSAMPLE
ASSAY
959 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
35
10
9
31
1
Langerhans cell
85
48
monocyte
54
15
44
1
1
pancreatic beta cell
21
23
12
9
16
1
exocrine cell
39
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