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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
78
total RNA-seq
56
snATAC-seq
46
ATAC-seq
45
single cell RNA-seq
41
WGBS
16
pCHi-C
4
Hi-C
Assay category
123
Transcription
117
DNA binding
102
DNA accessibility
41
DNA methylation
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
135
May, 2021
134
May, 2022
76
February, 2023
September, 2020
39
February, 2021
8
January, 2021
7
August, 2020
3
October, 2022
1
March, 2023
Available data
222
bigWig
180
bam
134
zippedFastqFolder
128
fastq
114
bed narrowPeak
tsv
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
Organism
403
Homo sapiens
Biosample type
403
primary cell
351
tissue
54
in vitro differentiated cells
38
cell line
2
stem cell
Organ
127
epithelium
127
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
259
HPAP
108
T1D
35
AMP
1
ITG
Genome assembly (visualization)
122
hg19
92
GRCh38
Lab
AMP-T2D consortium
259
Klaus Kaestner, Upenn
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
files.file_type!
tsv
lab.title!
AMP-T2D consortium
month_released!
September, 2020
BIOSAMPLE
ASSAY
403 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
primary cell
Langerhans cell
48
45
monocyte
84
1
pancreatic alpha cell
27
27
25
1
pancreatic beta cell
10
15
16
1
exocrine cell
39
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