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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
275
ChIP-seq
95
total RNA-seq
88
ATAC-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
275
DNA binding
182
Transcription
176
DNA accessibility
52
DNA methylation
10
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
31
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
134
May, 2022
May, 2020
76
February, 2023
59
August, 2017
59
September, 2020
55
June, 2019
47
September, 2018
41
February, 2021
32
October, 2019
13
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
August, 2021
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
520
bigWig
515
bam
409
fastq
292
bed narrowPeak
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
96
tagAlign
49
bed broadPeak
49
bigBed broadPeak
34
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
712
Homo sapiens
Biosample type
1521
tissue
712
primary cell
516
cell line
228
in vitro differentiated cells
6
stem cell
Organ
286
epithelium
238
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
8
blood
8
bodily fluid
5
eye
5
liver
1
bone element
1
bone marrow
Project
318
HPAP
285
AMP
108
T1D
1
ITG
Genome assembly (visualization)
328
hg19
281
GRCh38
Lab
318
Klaus Kaestner, Upenn
250
AMP-T2D consortium
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
33
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tsv
month_released!
August, 2021
May, 2020
BIOSAMPLE
ASSAY
712 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
42
35
25
1
monocyte
85
1
13
1
1
pancreatic beta cell
13
11
23
16
1
exocrine cell
39
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