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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
ChIP-seq
172
ATAC-seq
97
total RNA-seq
74
single cell RNA-seq
41
WGBS
29
DNase-seq
29
snATAC-seq
16
pCHi-C
9
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
243
DNA binding
231
DNA accessibility
171
Transcription
51
DNA methylation
9
3D chromatin structure
Target of assay
202
histone
202
histone modification
104
broad histone mark
98
narrow histone mark
31
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
August, 2017
59
September, 2020
53
June, 2019
September, 2018
February, 2021
31
October, 2019
11
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
528
bigWig
522
bam
291
fastq
242
bed narrowPeak
tsv
153
zippedFastqFolder
96
tagAlign
93
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
30
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
1
csv
1
tar
Organism
721
Homo sapiens
Biosample type
1402
tissue
721
primary cell
244
in vitro differentiated cells
141
cell line
6
stem cell
Organ
255
epithelium
192
pancreas
35
vasculature
30
kidney
29
blood vessel
22
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
333
AMP
279
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
320
hg19
231
GRCh38
Lab
298
AMP-T2D consortium
279
Klaus Kaestner, Upenn
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
36
inconsistent ontology term
4
audit script error
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tsv
month_released!
February, 2021
September, 2018
organ_slims!
liver
BIOSAMPLE
ASSAY
721 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
13
32
42
25
1
monocyte
85
15
1
1
1
Langerhans cell
73
21
pancreatic beta cell
13
19
11
16
1
exocrine cell
39
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