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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
202
ChIP-seq
190
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
17
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
271
DNA accessibility
202
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
178
histone
178
histone modification
94
broad histone mark
84
narrow histone mark
19
control
8
RNA binding protein
8
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
539
bigWig
515
bam
346
fastq
268
tsv
236
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
72
bigBed narrowPeak
35
bed bed3+
31
bed broadPeak
31
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
990
Homo sapiens
Biosample type
2088
tissue
990
primary cell
631
cell line
315
in vitro differentiated cells
10
stem cell
Organ
339
epithelium
300
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
461
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
550
hg19
467
GRCh38
Lab
426
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
52
inconsistent ontology term
30
audit script error
Audit category:
32
missing controlled_by
files.file_type!
txt
month_released!
August, 2017
October, 2019
September, 2017
BIOSAMPLE
ASSAY
990 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
32
12
31
1
pancreatic beta cell
21
20
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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