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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
161
ATAC-seq
135
single cell RNA-seq
35
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
384
Transcription
279
DNA binding
228
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
40
September, 2020
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
935
Homo sapiens
Biosample type
2734
tissue
935
primary cell
660
cell line
394
in vitro differentiated cells
8
stem cell
Organ
326
epithelium
266
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
559
AMP
204
T1D
171
HPAP
1
ITG
Genome assembly (visualization)
628
hg19
536
GRCh38
Lab
524
AMP-T2D consortium
239
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
zippedFastqFolder
lab.title!
Anna Gloyn, Oxford
organ_slims!
nerve
BIOSAMPLE
ASSAY
935 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
1
6
Langerhans cell
33
27
pancreatic beta cell
13
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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