Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
small RNA-seq
1
total RNA-seq
Assay category
17
DNA binding
3
DNA accessibility
2
3D chromatin structure
2
Transcription
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
2
July, 2019
1
March, 2020
Available data
22
bam
17
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
24
Homo sapiens
Biosample type
488
tissue
24
primary cell
1
in vitro differentiated cells
Organ
326
epithelium
266
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
24
AMP
Genome assembly (visualization)
19
hg19
14
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
zippedFastqFolder
organ_slims!
thymus
BIOSAMPLE
ASSAY
24 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
small RNA-seq
total RNA-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
mesenchymal stem cell of adipose
1
1
Download