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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 279ChIP-seq
  • 247total RNA-seq
  • 161ATAC-seq
  • 135single cell RNA-seq
  • 35snATAC-seq
  • 31DNase-seq
  • 17pCHi-C
  • 10Hi-C
  • 10RRBS
  • 6WGBS
  • 2small RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
Assay category
  • 384Transcription
  • 279DNA binding
  • 228DNA accessibility
  • 17DNA methylation
  • 103D chromatin structure
Target of assay
  • 237histone
  • 237histone modification
  • 122broad histone mark
  • 115narrow histone mark
  • 35control
  • 10RNA binding protein
  • 10transcription factor
  • 1chromatin remodeller
Date released
  • 206May, 2021
  • 147May, 2020
  • 88February, 2023
  • 73September, 2018
  • 59August, 2017
  • 55June, 2019
  • 48February, 2021
  • 48July, 2018
  • 43April, 2018
  • 40September, 2020
  • 34October, 2019
  • 31July, 2019
  • 9November, 2017
  • 8January, 2021
  • 7August, 2020
  • 6November, 2020
  • 5December, 2019
  • 5May, 2019
  • 5September, 2017
  • 4August, 2021
  • 3August, 2018
  • 3June, 2018
  • 3October, 2022
  • 2October, 2018
  • 1March, 2020
  • 1March, 2023
  • 1November, 2018
Available data
  • 613bigWig
  • 609bam
  • 409fastq
  • 295bed narrowPeak
  • 270tsv
  • zippedFastqFolder
  • 109bigBed narrowPeak
  • 100tagAlign
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 37bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
  • 1bed bed3
  • 1tar
Organism
  • 935Homo sapiens
Biosample type
  • 2777tissue
  • 935primary cell
  • 662cell line
  • 394in vitro differentiated cells
  • 10stem cell
Organ
  • 326epithelium
  • 266pancreas
  • 39connective tissue
  • 37vasculature
  • 36kidney
  • 31blood vessel
  • 22vein
  • 21brain
  • 14liver
  • 14musculature of body
  • 13heart
  • 8blood
  • 8bodily fluid
  • 5eye
  • 2adipose tissue
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 559AMP
  • 204T1D
  • 171HPAP
  • 1ITG
Genome assembly (visualization)
  • 628hg19
  • 536GRCh38
Lab
  • 524AMP-T2D consortium
  • 239Kyle Gaulton, UCSD
  • 171Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 54inconsistent ontology term
  • 31audit script error
Audit category:
  • 44missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
files.file_type!
  • zippedFastqFolder
BIOSAMPLE
ASSAY

935 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte85541511
pancreatic alpha cell1352131216
Langerhans cell3327
pancreatic beta cell132110121
CD8-positive, alpha-beta T cell33421
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