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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
239
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
2
DNase-seq
2
small RNA-seq
1
FAIRE-seq
Assay category
252
Transcription
239
DNA binding
87
DNA accessibility
Target of assay
200
histone
200
histone modification
101
narrow histone mark
99
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
58
August, 2017
48
July, 2018
43
April, 2018
31
June, 2019
29
October, 2019
18
July, 2019
9
November, 2017
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
2
February, 2021
2
October, 2018
1
August, 2021
Available data
610
bigWig
609
bam
368
fastq
295
bed narrowPeak
270
tsv
134
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
578
Homo sapiens
Biosample type
1703
tissue
581
cell line
578
primary cell
272
in vitro differentiated cells
Organ
223
epithelium
194
pancreas
29
connective tissue
26
vasculature
23
blood vessel
21
kidney
18
vein
12
brain
12
musculature of body
9
heart
7
liver
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
398
AMP
180
T1D
Genome assembly (visualization)
550
hg19
495
GRCh38
Lab
398
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
42
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
lab.title!
Bing Ren, UCSD
month_released!
September, 2020
BIOSAMPLE
ASSAY
578 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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