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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
230
ChIP-seq
140
total RNA-seq
96
single cell RNA-seq
82
ATAC-seq
23
DNase-seq
1
FAIRE-seq
1
small RNA-seq
Assay category
237
Transcription
230
DNA binding
106
DNA accessibility
Target of assay
195
histone
195
histone modification
99
narrow histone mark
96
broad histone mark
29
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
58
August, 2017
46
July, 2018
41
April, 2018
38
June, 2019
31
October, 2019
12
July, 2019
9
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
Available data
581
bigWig
573
bam
406
fastq
278
bed narrowPeak
255
tsv
153
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
573
Homo sapiens
Biosample type
1409
tissue
581
cell line
573
primary cell
232
in vitro differentiated cells
3
stem cell
Organ
242
epithelium
194
pancreas
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
12
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
393
AMP
180
T1D
Genome assembly (visualization)
542
hg19
493
GRCh38
Lab
393
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
33
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
573 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
small RNA-seq
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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