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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
1
pCHi-C
Assay category
28
DNA binding
Target of assay
25
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
12
August, 2017
8
June, 2019
6
October, 2019
1
August, 2021
1
February, 2021
1
May, 2019
Available data
bigWig
609
bam
409
fastq
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
29
Homo sapiens
Biosample type
176
tissue
68
cell line
31
in vitro differentiated cells
29
primary cell
1
stem cell
Organ
22
epithelium
12
pancreas
5
blood vessel
5
vasculature
5
vein
4
connective tissue
3
kidney
2
heart
2
musculature of body
1
eye
1
liver
Project
29
AMP
Genome assembly (visualization)
1
hg19
Lab
29
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
files.file_type!
bed narrowPeak
bigWig
hic
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
pCHi-C
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
endothelial cell of umbilical vein
5
cardiac fibroblast
2
epithelial cell of proximal tubule
2
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