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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
122
total RNA-seq
62
ATAC-seq
23
DNase-seq
5
single cell RNA-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
148
DNA binding
129
Transcription
86
DNA accessibility
Target of assay
130
histone
130
histone modification
67
broad histone mark
63
narrow histone mark
13
control
5
RNA binding protein
5
transcription factor
Date released
149
May, 2021
90
May, 2020
50
June, 2019
31
October, 2019
15
July, 2019
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
1
August, 2017
Available data
593
bigWig
592
bam
fastq
284
bed narrowPeak
267
tsv
153
zippedFastqFolder
100
tagAlign
98
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
364
Homo sapiens
Biosample type
1322
tissue
364
primary cell
157
cell line
155
in vitro differentiated cells
Organ
73
epithelium
33
connective tissue
31
kidney
26
vasculature
24
blood vessel
20
vein
13
musculature of body
12
heart
12
liver
brain
5
pancreas
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
184
AMP
180
T1D
Genome assembly (visualization)
341
hg19
298
GRCh38
Lab
184
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
38
inconsistent ontology term
files.file_type!
fastq
organ_slims!
brain
BIOSAMPLE
ASSAY
364 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
endothelial cell of umbilical vein
17
2
1
epithelial cell of proximal tubule
10
1
1
hepatocyte
4
5
1
skeletal muscle satellite cell
8
1
1
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