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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
142
ChIP-seq
100
single cell RNA-seq
84
ATAC-seq
29
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
252
Transcription
142
DNA binding
114
DNA accessibility
Target of assay
105
histone
105
histone modification
56
narrow histone mark
49
broad histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
90
May, 2020
72
September, 2018
65
May, 2021
55
June, 2019
48
July, 2018
46
August, 2017
43
April, 2018
31
October, 2019
18
July, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
509
Homo sapiens
Biosample type
1733
tissue
562
cell line
509
primary cell
265
in vitro differentiated cells
3
stem cell
Organ
238
epithelium
194
pancreas
36
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
8
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
413
AMP
96
T1D
Genome assembly (visualization)
475
hg19
427
GRCh38
Lab
413
AMP-T2D consortium
96
Kyle Gaulton, UCSD
Audit category:
45
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
ibed
tagAlign
txt
BIOSAMPLE
ASSAY
509 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
53
15
pancreatic beta cell
10
13
12
7
pancreatic alpha cell
10
13
12
6
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
4
8
12
5
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