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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
ChIP-seq
148
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
23
DNase-seq
2
small RNA-seq
1
pCHi-C
Assay category
250
Transcription
219
DNA binding
107
DNA accessibility
Target of assay
186
histone
186
histone modification
95
narrow histone mark
91
broad histone mark
28
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
58
August, 2017
51
June, 2019
48
July, 2018
43
April, 2018
16
July, 2019
11
October, 2019
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
Available data
584
bigWig
577
bam
403
fastq
274
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
577
Homo sapiens
Biosample type
1812
tissue
577
primary cell
493
cell line
291
in vitro differentiated cells
3
stem cell
Organ
242
epithelium
194
pancreas
36
connective tissue
vasculature
31
kidney
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
12
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
397
AMP
180
T1D
Genome assembly (visualization)
548
hg19
503
GRCh38
Lab
397
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
44
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign bed3+
month_released!
January, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
577 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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