Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
16
ATAC-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
28
DNA binding
16
DNA accessibility
2
Transcription
Target of assay
25
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
13
May, 2021
12
August, 2017
8
June, 2019
8
October, 2019
1
August, 2021
1
February, 2021
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
47
Homo sapiens
Biosample type
229
tissue
78
cell line
48
in vitro differentiated cells
47
primary cell
1
stem cell
Organ
23
epithelium
12
pancreas
5
blood vessel
5
connective tissue
5
vasculature
5
vein
3
kidney
2
heart
2
liver
2
musculature of body
1
eye
Project
47
AMP
Genome assembly (visualization)
17
hg19
16
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
files.file_type!
bigWig
month_released!
January, 2018
BIOSAMPLE
ASSAY
47 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
primary cell
monocyte
13
pancreatic alpha cell
6
pancreatic beta cell
6
endothelial cell of umbilical vein
5
cardiac fibroblast
2
+ See 12 more…
See all biosamples
Download