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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
96
ATAC-seq
29
DNase-seq
6
WGBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
252
Transcription
242
DNA binding
126
DNA accessibility
6
DNA methylation
Target of assay
203
histone
203
histone modification
103
narrow histone mark
100
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
58
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
31
October, 2019
18
July, 2019
12
February, 2023
9
February, 2021
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
627
Homo sapiens
Biosample type
2027
tissue
627
primary cell
582
cell line
290
in vitro differentiated cells
7
stem cell
Organ
248
epithelium
200
pancreas
36
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
12
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
441
AMP
180
T1D
6
HPAP
Genome assembly (visualization)
574
hg19
525
GRCh38
Lab
441
AMP-T2D consortium
180
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
51
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2019
BIOSAMPLE
ASSAY
627 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic alpha cell
13
10
12
6
6
pancreatic beta cell
13
10
12
7
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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