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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
Assay category
97
DNA binding
Target of assay
188
histone
188
histone modification
97
narrow histone mark
91
broad histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
40
May, 2021
22
August, 2017
15
September, 2018
11
June, 2019
3
November, 2017
3
October, 2019
2
August, 2021
1
May, 2019
Available data
107
bigWig
99
bed narrowPeak
97
bam
47
tagAlign
40
fastq
21
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
2
bed bed3+
Organism
97
Homo sapiens
Biosample type
243
tissue
97
primary cell
41
in vitro differentiated cells
17
cell line
1
stem cell
Organ
35
epithelium
31
pancreas
8
vasculature
7
blood vessel
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
57
AMP
40
T1D
Genome assembly (visualization)
97
GRCh38
97
hg19
Lab
57
AMP-T2D consortium
40
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
lab.title!
Mark McCarthy, Oxford
organ_slims!
vein
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
primary cell
monocyte
40
pancreatic endocrine cell
12
pancreatic ductal cell
7
skeletal muscle myoblast
6
epithelial cell of proximal tubule
4
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