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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
150
total RNA-seq
81
ATAC-seq
52
single cell RNA-seq
27
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
204
Transcription
180
DNA binding
109
DNA accessibility
Target of assay
162
histone
162
histone modification
84
broad histone mark
78
narrow histone mark
16
control
5
RNA binding protein
5
transcription factor
Date released
149
May, 2021
90
May, 2020
72
September, 2018
August, 2017
55
June, 2019
July, 2018
43
April, 2018
31
October, 2019
18
July, 2019
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
510
bigWig
494
bam
294
fastq
256
bed narrowPeak
222
tsv
153
zippedFastqFolder
88
tagAlign
84
bigBed narrowPeak
37
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
494
Homo sapiens
Biosample type
1552
tissue
494
primary cell
268
cell line
237
in vitro differentiated cells
3
stem cell
Organ
174
epithelium
116
pancreas
34
connective tissue
31
kidney
26
vasculature
24
blood vessel
20
vein
13
musculature of body
12
heart
12
liver
8
brain
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
314
AMP
180
T1D
Genome assembly (visualization)
471
hg19
429
GRCh38
Lab
314
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
39
inconsistent ontology term
Audit category:
32
missing controlled_by
month_released!
August, 2017
July, 2018
November, 2017
BIOSAMPLE
ASSAY
494 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic ductal cell
13
4
4
7
pancreatic acinar cell
8
4
4
7
endothelial cell of umbilical vein
17
2
1
pancreatic alpha cell
10
5
5
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