Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
211
ChIP-seq
150
total RNA-seq
84
ATAC-seq
49
single cell RNA-seq
5
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
211
DNA binding
201
Transcription
90
DNA accessibility
Target of assay
184
histone
184
histone modification
92
broad histone mark
92
narrow histone mark
24
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
58
August, 2017
June, 2019
July, 2018
43
April, 2018
31
October, 2019
18
July, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
515
bigWig
503
bam
358
fastq
248
bed narrowPeak
219
tsv
153
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
503
Homo sapiens
Biosample type
1628
tissue
582
cell line
503
primary cell
291
in vitro differentiated cells
3
stem cell
Organ
186
epithelium
154
pancreas
28
vasculature
25
blood vessel
20
vein
18
kidney
17
connective tissue
12
brain
10
liver
4
heart
2
adipose tissue
2
artery
2
musculature of body
1
pericardium
Project
323
AMP
180
T1D
Genome assembly (visualization)
483
hg19
427
GRCh38
Lab
323
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2018
July, 2018
June, 2019
BIOSAMPLE
ASSAY
503 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
7
3
pancreatic alpha cell
13
10
6
3
pancreatic ductal cell
13
4
4
7
pancreatic acinar cell
8
4
5
6
+ See 58 more…
See all biosamples
Download