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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
total RNA-seq
3
ChIP-seq
3
DNase-seq
Assay category
4
Transcription
3
DNA accessibility
3
DNA binding
Target of assay
2
control
2
histone
2
histone modification
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
6
June, 2019
4
July, 2019
Available data
10
bam
8
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
4
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
10
Homo sapiens
Biosample type
110
tissue
66
cell line
10
primary cell
1
in vitro differentiated cells
Organ
207
epithelium
163
pancreas
32
connective tissue
26
kidney
24
vasculature
20
blood vessel
14
brain
14
vein
10
heart
10
liver
9
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
10
AMP
Genome assembly (visualization)
8
GRCh38
7
hg19
Lab
10
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
August, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
10 results
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total RNA-seq
ChIP-seq
DNase-seq
primary cell
cardiac fibroblast
3
3
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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