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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
29
ChIP-seq
29
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
252
Transcription
114
DNA accessibility
29
DNA binding
Target of assay
203
histone
histone modification
103
narrow histone mark
100
broad histone mark
32
control
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
90
May, 2020
65
May, 2021
48
July, 2018
43
April, 2018
40
September, 2018
32
June, 2019
18
August, 2017
18
July, 2019
10
October, 2019
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
1
August, 2021
1
May, 2019
Available data
396
bam
373
bigWig
331
fastq
270
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
396
Homo sapiens
Biosample type
1418
tissue
483
cell line
396
primary cell
206
in vitro differentiated cells
1
stem cell
Organ
171
epithelium
136
pancreas
27
connective tissue
19
kidney
13
vasculature
11
brain
10
blood vessel
9
heart
9
liver
5
musculature of body
5
vein
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
300
AMP
96
T1D
Genome assembly (visualization)
364
hg19
318
GRCh38
Lab
300
AMP-T2D consortium
96
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
month_released!
January, 2018
target.investigated_as!
RNA binding protein
histone modification
BIOSAMPLE
ASSAY
396 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
53
15
pancreatic beta cell
10
12
7
6
pancreatic alpha cell
10
12
6
6
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
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