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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
ChIP-seq
137
total RNA-seq
97
single cell RNA-seq
84
ATAC-seq
29
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
241
DNA binding
234
Transcription
114
DNA accessibility
Target of assay
203
histone
203
histone modification
103
narrow histone mark
100
broad histone mark
29
control
10
RNA binding protein
10
transcription factor
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
57
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
31
October, 2019
July, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
590
bam
587
bigWig
367
fastq
294
bed narrowPeak
252
tsv
134
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
33
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
590
Homo sapiens
Biosample type
1841
tissue
590
primary cell
552
cell line
288
in vitro differentiated cells
3
stem cell
Organ
237
epithelium
194
pancreas
30
connective tissue
30
vasculature
27
kidney
25
blood vessel
20
vein
14
brain
12
liver
11
musculature of body
8
heart
4
eye
Project
410
AMP
180
T1D
Genome assembly (visualization)
555
hg19
506
GRCh38
Lab
410
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
45
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2019
September, 2020
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
590 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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