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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
148
total RNA-seq
100
single cell RNA-seq
82
ATAC-seq
27
DNase-seq
2
small RNA-seq
1
pCHi-C
Assay category
250
Transcription
218
DNA binding
109
DNA accessibility
Target of assay
182
histone
182
histone modification
94
narrow histone mark
88
broad histone mark
29
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
58
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
October, 2019
18
July, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
590
bigWig
578
bam
409
fastq
274
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
578
Homo sapiens
Biosample type
1721
tissue
578
primary cell
493
cell line
287
in vitro differentiated cells
3
stem cell
Organ
212
epithelium
194
pancreas
36
connective tissue
22
kidney
17
brain
13
musculature of body
12
heart
12
vasculature
11
liver
7
blood vessel
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
398
AMP
180
T1D
Genome assembly (visualization)
549
hg19
503
GRCh38
Lab
398
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
43
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2019
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
578 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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