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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
11
total RNA-seq
7
DNase-seq
4
single cell RNA-seq
2
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
22
DNA binding
17
Transcription
9
DNA accessibility
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
control
1
RNA binding protein
1
transcription factor
Date released
28
June, 2019
8
July, 2019
6
November, 2020
3
February, 2021
2
April, 2018
2
July, 2018
Available data
49
bam
43
bigWig
26
bed narrowPeak
24
bigBed narrowPeak
17
tsv
9
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
3
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
49
Homo sapiens
Biosample type
542
tissue
59
in vitro differentiated cells
49
primary cell
Organ
242
epithelium
194
pancreas
36
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
12
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
49
AMP
Genome assembly (visualization)
43
GRCh38
43
hg19
Lab
49
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
primary cell
skeletal muscle satellite cell
8
1
1
osteoblast
5
1
2
1
cardiac fibroblast
5
3
mesenchymal stem cell
7
pancreatic stellate cell
4
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