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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 242ChIP-seq
  • 150total RNA-seq
  • 100single cell RNA-seq
  • 84ATAC-seq
  • 29DNase-seq
  • 2small RNA-seq
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 252Transcription
  • 242DNA binding
  • 114DNA accessibility
Target of assay
  • 203histone
  • 203histone modification
  • 103narrow histone mark
  • 100broad histone mark
  • 32control
  • 10RNA binding protein
  • 10transcription factor
  • 1chromatin remodeller
Date released
  • 149May, 2021
  • 90May, 2020
  • 72September, 2018
  • 58August, 2017
  • 55June, 2019
  • 48July, 2018
  • 43April, 2018
  • 31October, 2019
  • 18July, 2019
  • 9November, 2017
  • 6November, 2020
  • 5December, 2019
  • 5May, 2019
  • 5September, 2017
  • 4August, 2021
  • 3August, 2018
  • 3February, 2021
  • 3June, 2018
  • 2October, 2018
Available data
  • 613bigWig
  • 609bam
  • 409fastq
  • 295bed narrowPeak
  • 270tsv
  • 153zippedFastqFolder
  • 109bigBed narrowPeak
  • 100tagAlign
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 37bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
  • 1bed bed3
  • 1tar
Organism
  • 609Homo sapiens
Biosample type
  • 1907tissue
  • 609primary cell
  • 582cell line
  • 291in vitro differentiated cells
  • 3stem cell
Organ
  • 242epithelium
  • 194pancreas
  • 36connective tissue
  • 32vasculature
  • 31kidney
  • 27blood vessel
  • 20vein
  • 17brain
  • 13musculature of body
  • 12heart
  • 12liver
  • 4eye
  • 2adipose tissue
  • 2artery
  • 1pericardium
Project
  • 429AMP
  • 180T1D
Genome assembly (visualization)
  • 574hg19
  • 525GRCh38
Lab
  • 429AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
Audit category:
  • 45inconsistent ontology term
Audit category:
  • 44missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

609 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte845315
pancreatic beta cell1310127
pancreatic alpha cell1310126
pancreatic ductal cell134104
pancreatic acinar cell84125
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