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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
4
Hi-C
1
pCHi-C
Assay category
27
DNA accessibility
4
3D chromatin structure
Date released
24
June, 2019
4
July, 2019
2
October, 2019
1
February, 2021
1
November, 2020
Available data
429
bam
409
fastq
398
bigWig
181
bed narrowPeak
174
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
32
Homo sapiens
Biosample type
205
tissue
32
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
18
epithelium
10
kidney
8
brain
8
connective tissue
8
vasculature
6
blood vessel
3
heart
3
liver
2
vein
1
eye
1
musculature of body
Project
32
AMP
Genome assembly (visualization)
27
GRCh38
25
hg19
Lab
32
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
bed bedgraph
tagAlign
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
32 results
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DNase-seq
Hi-C
pCHi-C
primary cell
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
endothelial cell of umbilical vein
2
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