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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
2
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
3
DNA binding
2
3D chromatin structure
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
3
August, 2021
2
July, 2019
2
May, 2021
1
February, 2021
Available data
584
bigWig
577
bam
403
fastq
274
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
8
Homo sapiens
Biosample type
29
tissue
25
in vitro differentiated cells
8
primary cell
3
stem cell
2
cell line
Organ
5
epithelium
4
liver
3
brain
2
blood vessel
2
connective tissue
vasculature
Project
8
AMP
Genome assembly (visualization)
8
hg19
3
GRCh38
Lab
6
AMP-T2D consortium
2
Kyle Gaulton, UCSD
files.file_type!
bed broadPeak
organ_slims!
vasculature
BIOSAMPLE
ASSAY
8 results
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Clear Filters
ChIP-seq
Hi-C
total RNA-seq
pCHi-C
primary cell
hepatocyte
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain pericyte
1
osteoblast
1
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