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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
DNase-seq
3
ChIP-seq
3
Hi-C
2
total RNA-seq
Assay category
21
DNA accessibility
3
3D chromatin structure
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
19
June, 2019
3
August, 2021
3
July, 2019
2
May, 2021
2
October, 2019
Available data
571
bigWig
544
bam
390
fastq
278
bed narrowPeak
252
tsv
153
zippedFastqFolder
98
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
tar
Organism
29
Homo sapiens
Biosample type
196
tissue
29
primary cell
8
in vitro differentiated cells
3
cell line
2
stem cell
Organ
21
epithelium
10
kidney
8
brain
connective tissue
8
vasculature
6
blood vessel
6
liver
3
heart
2
vein
1
eye
1
musculature of body
Project
29
AMP
Genome assembly (visualization)
24
GRCh38
23
hg19
Lab
27
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
tar
organ_slims!
connective tissue
target.investigated_as!
control
BIOSAMPLE
ASSAY
29 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
primary cell
hepatocyte
1
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
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