Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
27
DNase-seq
4
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
100
DNA binding
27
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
98
histone
98
histone modification
51
broad histone mark
47
narrow histone mark
2
control
Date released
86
May, 2021
24
June, 2019
12
August, 2017
4
August, 2021
4
July, 2019
2
October, 2019
1
February, 2021
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
1
tar
Organism
134
Homo sapiens
Biosample type
443
tissue
134
primary cell
62
in vitro differentiated cells
23
cell line
3
stem cell
Organ
22
epithelium
10
kidney
8
brain
8
connective tissue
8
vasculature
7
liver
6
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
Project
84
T1D
50
AMP
Genome assembly (visualization)
126
hg19
125
GRCh38
Lab
86
Kyle Gaulton, UCSD
48
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
csv
organ_slims!
embryo
BIOSAMPLE
ASSAY
134 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
pCHi-C
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
1
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
+ See 21 more…
See all biosamples
Download