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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
DNase-seq
3
ChIP-seq
2
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
23
DNA accessibility
3
DNA binding
2
3D chromatin structure
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
22
June, 2019
3
August, 2021
2
July, 2019
2
May, 2021
1
February, 2021
1
November, 2020
Available data
586
bigWig
579
bam
403
fastq
278
bed narrowPeak
265
tsv
153
zippedFastqFolder
100
tagAlign
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
31
Homo sapiens
Biosample type
200
tissue
31
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
21
epithelium
10
kidney
8
brain
8
connective tissue
8
vasculature
blood vessel
6
liver
3
heart
2
vein
1
eye
1
musculature of body
Project
31
AMP
Genome assembly (visualization)
26
GRCh38
25
hg19
Lab
29
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
month_released!
August, 2018
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
31 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
pCHi-C
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain pericyte
1
1
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