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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
DNase-seq
2
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
21
DNA accessibility
2
3D chromatin structure
2
Transcription
Date released
20
June, 2019
August, 2021
2
July, 2019
2
May, 2021
1
February, 2021
1
November, 2020
Available data
581
bigWig
573
bam
403
fastq
271
bed narrowPeak
268
tsv
153
zippedFastqFolder
96
tagAlign
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
26
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
3
bedpe bed3+
3
cool
3
hic
2
csv
2
hdf5
1
bed bed3
Organism
26
Homo sapiens
Biosample type
200
tissue
26
primary cell
23
in vitro differentiated cells
3
cell line
3
stem cell
Organ
18
epithelium
10
kidney
8
brain
8
connective tissue
vasculature
6
blood vessel
3
heart
3
liver
2
vein
1
eye
1
musculature of body
Project
26
AMP
Genome assembly (visualization)
21
GRCh38
20
hg19
Lab
24
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
month_released!
August, 2021
March, 2023
organ_slims!
vasculature
BIOSAMPLE
ASSAY
26 results
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DNase-seq
Hi-C
total RNA-seq
pCHi-C
primary cell
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain pericyte
1
1
glomerular visceral epithelial cell
2
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