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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 27DNase-seq
  • 4Hi-C
  • 3ChIP-seq
  • 2total RNA-seq
  • 1pCHi-C
Assay category
  • 27DNA accessibility
  • 43D chromatin structure
  • 3DNA binding
  • 2Transcription
Target of assay
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1broad histone mark
Date released
  • 24June, 2019
  • 4July, 2019
  • 3August, 2021
  • 2May, 2021
  • 2October, 2019
  • 1February, 2021
  • 1November, 2020
Available data
  • 613bigWig
  • 609bam
  • 409fastq
  • 295bed narrowPeak
  • 270tsv
  • 153zippedFastqFolder
  • 109bigBed narrowPeak
  • 100tagAlign
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 37bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
  • 1bed bed3
  • 1tar
Organism
  • 37Homo sapiens
Biosample type
  • 205tissue
  • 37primary cell
  • 25in vitro differentiated cells
  • 3cell line
  • 3stem cell
Organ
  • 21epithelium
  • 10kidney
  • 8brain
  • 8connective tissue
  • 8vasculature
  • 6blood vessel
  • 6liver
  • 3heart
  • 2vein
  • 1eye
  • 1musculature of body
Project
  • 37AMP
Genome assembly (visualization)
  • 30GRCh38
  • 30hg19
Lab
  • 35AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
Audit category:
  • 3inconsistent ontology term
BIOSAMPLE
ASSAY

37 results

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DNase-seq
Hi-C
ChIP-seq
total RNA-seq
pCHi-C
primary cell
hepatocyte13
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
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