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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
100
single cell RNA-seq
26
DNase-seq
19
ChIP-seq
13
ATAC-seq
6
WGBS
2
small RNA-seq
Assay category
252
Transcription
39
DNA accessibility
19
DNA binding
6
DNA methylation
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
5
RNA binding protein
5
transcription factor
3
control
1
chromatin remodeller
Date released
52
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
26
September, 2018
24
June, 2019
18
July, 2019
14
August, 2017
12
February, 2023
8
February, 2021
6
November, 2017
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
Available data
598
bigWig
589
bam
409
fastq
282
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
316
Homo sapiens
Biosample type
1294
tissue
316
primary cell
179
cell line
137
in vitro differentiated cells
4
stem cell
Organ
138
epithelium
108
pancreas
22
connective tissue
16
kidney
14
brain
14
vasculature
10
blood vessel
7
heart
7
liver
vein
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
214
AMP
96
T1D
6
HPAP
Genome assembly (visualization)
296
GRCh38
291
hg19
Lab
214
AMP-T2D consortium
96
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
vein
BIOSAMPLE
ASSAY
316 results
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total RNA-seq
single cell RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
skeletal muscle myoblast
1
1
13
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