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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
23
ATAC-seq
16
DNase-seq
6
RRBS
1
FAIRE-seq
Assay category
66
DNA binding
40
DNA accessibility
6
DNA methylation
Target of assay
61
histone
61
histone modification
34
narrow histone mark
27
broad histone mark
5
RNA binding protein
5
transcription factor
Date released
35
September, 2018
20
October, 2019
18
June, 2019
17
August, 2017
6
July, 2019
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2021
Available data
241
bam
238
fastq
230
bigWig
115
tsv
106
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
112
Homo sapiens
Biosample type
112
primary cell
18
in vitro differentiated cells
15
cell line
12
tissue
Organ
112
epithelium
68
pancreas
25
kidney
22
vasculature
18
connective tissue
17
blood vessel
13
vein
12
brain
10
musculature of body
heart
7
liver
4
eye
Project
112
AMP
Genome assembly (visualization)
106
hg19
105
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
organ_slims!
heart
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
endothelial cell of umbilical vein
10
2
1
pancreatic acinar cell
8
5
pancreatic alpha cell
7
6
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