Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
23
DNase-seq
22
ATAC-seq
9
RRBS
Assay category
45
DNA accessibility
43
DNA binding
9
DNA methylation
Target of assay
35
histone
35
histone modification
19
narrow histone mark
16
broad histone mark
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
43
June, 2019
20
August, 2017
14
September, 2018
8
July, 2019
5
September, 2017
4
May, 2019
2
November, 2017
1
November, 2020
Available data
584
bigWig
577
bam
403
fastq
274
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
97
Homo sapiens
Biosample type
523
tissue
356
cell line
97
primary cell
17
in vitro differentiated cells
Organ
67
epithelium
22
pancreas
vasculature
19
kidney
17
blood vessel
16
connective tissue
13
vein
12
brain
10
musculature of body
7
heart
4
eye
3
liver
Project
97
AMP
Genome assembly (visualization)
91
hg19
85
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
vasculature
BIOSAMPLE
ASSAY
97 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
RRBS
primary cell
skeletal muscle myoblast
14
2
1
cardiac fibroblast
3
3
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
kidney epithelial cell
4
1
1
+ See 19 more…
See all biosamples
Download