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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
RRBS
6
Hi-C
Assay category
10
DNA methylation
6
3D chromatin structure
Date released
9
July, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
October, 2019
Available data
541
bigWig
bam
336
fastq
249
bed narrowPeak
244
tsv
153
zippedFastqFolder
100
tagAlign
95
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
16
Homo sapiens
Biosample type
20
tissue
16
primary cell
4
in vitro differentiated cells
2
cell line
Organ
11
epithelium
3
kidney
3
pancreas
3
vasculature
2
blood vessel
2
vein
1
brain
1
connective tissue
1
eye
1
heart
1
liver
1
musculature of body
Project
12
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
12
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
4
audit script error
2
inconsistent ontology term
files.file_type!
bam
month_released!
September, 2018
BIOSAMPLE
ASSAY
16 results
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RRBS
Hi-C
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
chondrocytes
1
choroid plexus epithelial cell
1
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