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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
RRBS
2
Hi-C
Assay category
10
DNA methylation
2
3D chromatin structure
Date released
9
July, 2019
1
August, 2017
1
March, 2020
1
October, 2019
Available data
429
bam
388
bigWig
240
fastq
bed narrowPeak
168
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
12
Homo sapiens
Biosample type
34
tissue
12
primary cell
4
in vitro differentiated cells
2
cell line
Organ
8
epithelium
3
kidney
3
vasculature
2
blood vessel
2
vein
1
brain
1
connective tissue
1
eye
1
heart
1
liver
1
musculature of body
Project
12
AMP
Genome assembly (visualization)
12
hg19
Lab
12
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
12 results
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RRBS
Hi-C
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
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