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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
33
single cell RNA-seq
21
snATAC-seq
10
RRBS
Assay category
60
DNA accessibility
51
DNA methylation
33
Transcription
Date released
134
May, 2022
September, 2020
9
July, 2019
1
August, 2017
Available data
605
bigWig
603
bam
368
fastq
293
bed narrowPeak
266
tsv
134
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
144
Homo sapiens
Biosample type
144
primary cell
25
tissue
1
cell line
Organ
86
epithelium
80
pancreas
3
kidney
1
brain
1
connective tissue
1
eye
1
heart
1
liver
1
musculature of body
1
vasculature
Project
134
HPAP
10
AMP
Genome assembly (visualization)
10
hg19
Lab
134
Klaus Kaestner, Upenn
10
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
November, 2020
September, 2020
BIOSAMPLE
ASSAY
144 results
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WGBS
ATAC-seq
single cell RNA-seq
snATAC-seq
RRBS
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cardiac fibroblast
1
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