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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
28
DNase-seq
21
ChIP-seq
21
snATAC-seq
Assay category
88
DNA accessibility
52
Transcription
41
DNA methylation
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
24
June, 2019
19
September, 2020
14
August, 2017
6
November, 2017
4
October, 2019
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
202
Homo sapiens
Biosample type
213
tissue
202
primary cell
59
cell line
1
in vitro differentiated cells
Organ
102
epithelium
80
pancreas
12
vasculature
11
brain
10
kidney
8
blood vessel
6
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
153
HPAP
49
AMP
Genome assembly (visualization)
45
GRCh38
42
hg19
Lab
153
Klaus Kaestner, Upenn
49
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
txt
organ_slims!
bone element
BIOSAMPLE
ASSAY
202 results
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single cell RNA-seq
WGBS
ATAC-seq
DNase-seq
ChIP-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
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