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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
17
ATAC-seq
Assay category
169
DNA binding
17
DNA accessibility
Target of assay
169
histone
169
histone modification
91
broad histone mark
78
narrow histone mark
Date released
127
May, 2021
32
September, 2018
14
August, 2017
8
October, 2019
3
August, 2021
1
February, 2021
1
November, 2020
Available data
600
bigWig
594
bam
406
fastq
289
bed narrowPeak
263
tsv
153
zippedFastqFolder
bigBed narrowPeak
100
tagAlign
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
186
Homo sapiens
Biosample type
339
tissue
186
primary cell
117
in vitro differentiated cells
37
cell line
2
stem cell
Organ
46
pancreas
45
epithelium
6
kidney
4
liver
2
connective tissue
Project
102
AMP
84
T1D
Genome assembly (visualization)
186
hg19
156
GRCh38
Lab
114
Kyle Gaulton, UCSD
72
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bigBed narrowPeak
month_released!
August, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
186 results
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ChIP-seq
ATAC-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
pancreatic endocrine cell
11
pancreatic acinar cell
8
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