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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
17
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
137
DNA binding
22
DNA accessibility
Target of assay
136
histone
136
histone modification
75
broad histone mark
61
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
127
May, 2021
June, 2019
21
October, 2019
4
May, 2019
3
August, 2021
2
November, 2020
1
August, 2017
1
February, 2021
Available data
523
bigWig
511
bam
fastq
248
bed narrowPeak
227
tsv
153
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
159
Homo sapiens
Biosample type
652
tissue
159
primary cell
57
cell line
39
in vitro differentiated cells
Organ
27
epithelium
13
blood vessel
13
vasculature
13
vein
10
kidney
4
liver
3
connective tissue
Project
84
T1D
75
AMP
Genome assembly (visualization)
159
hg19
127
GRCh38
Lab
114
Kyle Gaulton, UCSD
45
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
month_released!
April, 2018
June, 2019
BIOSAMPLE
ASSAY
159 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
endothelial cell of umbilical vein
10
2
1
epithelial cell of proximal tubule
6
kidney epithelial cell
4
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