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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
16
ATAC-seq
12
DNase-seq
Assay category
133
DNA binding
28
DNA accessibility
Target of assay
131
histone
131
histone modification
72
broad histone mark
59
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
127
May, 2021
29
June, 2019
2
November, 2020
1
August, 2017
1
February, 2021
1
October, 2019
Available data
372
bigWig
357
bam
189
bed narrowPeak
fastq
144
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
161
Homo sapiens
Biosample type
803
tissue
161
primary cell
42
cell line
37
in vitro differentiated cells
Organ
epithelium
22
kidney
17
connective tissue
17
vasculature
15
blood vessel
13
vein
9
musculature of body
6
heart
6
liver
5
brain
3
eye
Project
84
T1D
77
AMP
Genome assembly (visualization)
160
hg19
130
GRCh38
Lab
114
Kyle Gaulton, UCSD
47
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
files.file_type!
fastq
month_released!
April, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
161 results
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ChIP-seq
ATAC-seq
DNase-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
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