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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
39
ATAC-seq
19
DNase-seq
1
FAIRE-seq
Assay category
116
DNA binding
59
DNA accessibility
Target of assay
108
histone
108
histone modification
56
broad histone mark
52
narrow histone mark
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
46
September, 2018
43
May, 2021
35
June, 2019
22
August, 2017
15
October, 2019
6
November, 2017
5
September, 2017
2
November, 2020
1
February, 2021
Available data
585
bigWig
578
bam
409
fastq
273
bed narrowPeak
264
tsv
153
zippedFastqFolder
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
175
Homo sapiens
Biosample type
686
tissue
382
cell line
175
primary cell
114
in vitro differentiated cells
2
stem cell
Organ
103
epithelium
68
pancreas
kidney
21
vasculature
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
3
eye
3
liver
Project
175
AMP
Genome assembly (visualization)
174
hg19
141
GRCh38
Lab
145
AMP-T2D consortium
30
Kyle Gaulton, UCSD
Audit category:
20
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
organ_slims!
kidney
BIOSAMPLE
ASSAY
175 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
endothelial cell of umbilical vein
10
2
1
monocyte
13
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