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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
29
DNase-seq
26
ATAC-seq
1
FAIRE-seq
Assay category
112
DNA binding
56
DNA accessibility
Target of assay
102
histone
102
histone modification
54
narrow histone mark
48
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
46
September, 2018
33
August, 2017
21
October, 2019
May, 2021
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
415
bam
409
fastq
397
bigWig
173
tsv
168
bed narrowPeak
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
168
Homo sapiens
Biosample type
966
tissue
403
cell line
168
primary cell
127
in vitro differentiated cells
2
stem cell
Organ
106
epithelium
68
pancreas
22
kidney
21
vasculature
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
168
AMP
Genome assembly (visualization)
164
GRCh38
161
hg19
Lab
168
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
month_released!
May, 2021
BIOSAMPLE
ASSAY
168 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
endothelial cell of umbilical vein
10
2
1
pancreatic acinar cell
8
5
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