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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
29
DNase-seq
25
ATAC-seq
1
FAIRE-seq
Assay category
80
DNA binding
55
DNA accessibility
Target of assay
70
histone
70
histone modification
39
narrow histone mark
31
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
September, 2018
33
August, 2017
21
October, 2019
13
May, 2021
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
357
bam
316
bigWig
167
fastq
142
tsv
135
bed narrowPeak
95
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
csv
1
tar
Organism
135
Homo sapiens
Biosample type
842
tissue
390
cell line
135
primary cell
128
in vitro differentiated cells
2
stem cell
Organ
71
epithelium
22
kidney
22
pancreas
21
vasculature
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
135
AMP
Genome assembly (visualization)
131
GRCh38
128
hg19
Lab
135
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
September, 2018
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
monocyte
13
pancreatic alpha cell
7
3
pancreatic beta cell
7
3
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